LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-520a-3p


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Gene
miRNA
Score
DIANA Links
chr22-38_28785274-29006793.1
hsa-miR-520a-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
126870-126879
0.020
13
9mer
165213-165239
0.014
4
7mer
12815-12839
0.011
4
9mer
220517-220543
0.011
1
8mer
34185-34209
0.010
1
8mer
175985-176003
0.009
2
8mer
107210-107223
0.008
2
8mer
215814-215829
0.008
1
7mer
159783-159801
0.008
1
8mer
208646-208668
0.007
1
9mer
89499-89518
0.007
3
7mer
193792-193819
0.007
0
7mer
95952-95978
0.007
1
8mer
162177-162197
0.007
2
8mer
116109-116135
0.007
1
8mer
175916-175927
0.007
3
9mer
10721-10744
0.006
0
7mer
61342-61348
0.005
4
7mer
172334-172358
0.005
2
7mer
563-572
0.005
2
7mer
130365-130384
0.005
2
7mer
176460-176482
0.004
1
6mer
267037-267054
0.004
0
8mer
8238-8263
0.004
2
6mer
131799-131818
0.004
7
7mer
52889-52909
0.004
4
7mer
81580-81598
0.004
6
8mer
14013-14034
0.004
0
8mer
261781-261791
0.004
0
7mer
251109-251132
0.003
0
8mer
256656-256666
0.003
0
6mer
145015-145028
0.003
7
7mer
178045-178055
0.003
1
8mer
67846-67856
0.003
1
7mer
179112-179127
0.003
4
8mer
155521-155531
0.003
1
7mer
50490-50500
0.003
0
8mer
52128-52154
0.003
1
8mer
225494-225515
0.003
1
6mer
92511-92524
0.003
3
9mer
180847-180863
0.003
1
7mer
68264-68273
0.003
1
6mer
182710-182734
0.003
7
6mer
64490-64506
0.003
2
8mer
250225-250245
0.003
0
8mer
14169-14179
0.003
1
7mer
229817-229838
0.003
0
7mer
166749-166774
0.003
1
8mer
213960-213981
0.003
2
6mer
72766-72790
0.003
1
8mer
221549-221566
0.003
1
6mer
510-526
0.003
1
6mer
150453-150475
0.003
5
8mer
199232-199246
0.003
1
6mer
84814-84832
0.003
3
8mer
234648-234669
0.002
1
8mer
244875-244886
0.002
0
8mer
38256-38266
0.002
1
8mer
77183-77193
0.002
1
8mer
177426-177440
0.002
1
7mer
160687-160714
0.002
3
7mer
133288-133308
0.002
0
6mer
23680-23706
0.002
1
6mer
212112-212122
0.002
3
8mer
239058-239079
0.002
1
6mer
161218-161242
0.002
1
7mer
56230-56249
0.002
1
8mer
67554-67568
0.002
1
6mer
52410-52433
0.002
4
8mer
167725-167738
0.002
1
8mer
262097-262116
0.002
1
8mer
60231-60241
0.002
1
8mer
27717-27744
0.002
0
7mer
230066-230086
0.002
0
8mer
114907-114917
0.002
1
8mer
253389-253410
0.002
1
8mer
109486-109503
0.002
1
8mer
225071-225091
0.002
1
8mer
11462-11472
0.002
1
8mer
122231-122251
0.002
1
8mer
135109-135130
0.002
1
8mer
188883-188904
0.002
1
6mer
51810-51832
0.002
3
6mer
109792-109817
0.002
1
8mer
249447-249457
0.002
0
8mer
252059-252080
0.002
1
6mer
210050-210076
0.002
5
6mer
162426-162445
0.002
2
7mer
104448-104469
0.002
2
6mer
131039-131064
0.002
1
6mer
43069-43091
0.002
1
8mer
237866-237891
0.002
1
6mer
116861-116887
0.002
1
8mer
64970-64990
0.002
1
6mer
83471-83482
0.002
3
6mer
7300-7316
0.002
2
6mer
169329-169340
0.002
0
8mer
223523-223537
0.002
1
7mer
135572-135596
0.002
0
6mer
80772-80798
0.002
1
8mer
102885-102906
0.002
1
8mer
250898-250920
0.002
0
6mer
33762-33784
0.002
0
8mer
14864-14874
0.002
0
8mer
192482-192496
0.002
0
8mer
263111-263121
0.002
0
8mer
209141-209158
0.002
1
6mer
145534-145538
0.002
0
6mer
13488-13513
0.002
1
8mer
251545-251571
0.002
0
8mer
187104-187124
0.002
0
8mer
231662-231672
0.002
0
6mer
4876-4900
0.002
1
8mer
84839-84854
0.002
3
6mer
203680-203699
0.002
0
7mer
15227-15247
0.002
1
6mer
146751-146768
0.002
0
6mer
175530-175557
0.002
1
8mer
8831-8841
0.002
0
6mer
187391-187412
0.002
3
6mer
71209-71234
0.002
1
8mer
174443-174463
0.002
0
6mer
92166-92189
0.002
2
6mer
175134-175155
0.002
2
6mer
214995-215018
0.002
2
6mer
127543-127569
0.002
2
8mer
247898-247908
0.002
0
8mer
213289-213299
0.002
0
6mer
84330-84347
0.002
1
6mer
131355-131375
0.002
2
6mer
173803-173824
0.002
1
8mer
236482-236495
0.002
1
7mer
121446-121463
0.002
1
8mer
37473-37483
0.002
Not Conserved
6mer
18590-18610
0.002
1
8mer
45040-45060
0.002
0
8mer
73052-73073
0.002
0
6mer
255696-255712
0.002
1
6mer
245772-245785
0.002
0
8mer
206108-206130
0.002
0
6mer
184852-184867
0.002
1
6mer
154794-154814
0.002
2
7mer
209633-209657
0.002
1
6mer
141365-141382
0.002
6
8mer
193329-193348
0.002
Not Conserved
6mer
198068-198093
0.002
0
6mer
170320-170342
0.002
0
6mer
17527-17546
0.002
1
8mer
202795-202805
0.002
Not Conserved
6mer
126391-126416
0.002
1
8mer
181149-181169
0.002
Not Conserved
6mer
199893-199915
0.002
1
6mer
252278-252287
0.002
1
6mer
219874-219891
0.002
5
6mer
236278-236299
0.002
0
8mer
231047-231064
0.002
0
6mer
113928-113954
0.001
1
8mer
107253-107269
0.001
1
6mer
16829-16843
0.001
1
7mer
101862-101879
0.001
1
6mer
94358-94370
0.001
1
6mer
240915-240935
0.001
1
6mer
30921-30934
0.001
1
6mer
127900-127912
0.001
0
6mer
179637-179651
0.001
2
6mer
202303-202318
0.001
Not Conserved
6mer
5577-5585
0.001
2
6mer
2583-2605
0.001
0
6mer
243999-244025
0.001
1
6mer
45884-45903
0.001
1
6mer
115891-115905
0.001
1
6mer
185945-185958
0.001
0
6mer
17385-17400
0.001
0
6mer
121724-121738
0.001
0
6mer
5343-5358
0.001
1
6mer
69079-69101
0.001
1
6mer
149049-149066
0.001
Not Conserved
6mer
122713-122736
0.001
1
6mer
80069-80096
0.001
Not Conserved
6mer
183663-183686
0.001
0
6mer
153987-153999
0.001
1
6mer
228151-228173
0.001
1
6mer
134403-134429
0.001
1
6mer
217118-217122
0.001
0
6mer
194472-194493
0.001
1
6mer
242473-242490
0.001
0
6mer
98422-98446
0.001
0
6mer
35335-35353
0.001
1
6mer
182852-182871
0.001
3
6mer
255296-255321
0.001
1
6mer
211534-211555
0.001
1
6mer
175611-175632
0.001
1
8mer
234710-234731
0.001
0
7mer
100418-100442
0.001
0
6mer
217228-217242
0.001
0
7mer
214651-214674
0.001
Not Conserved
6mer
167832-167855
0.001
0
RP13-753N3.1
hsa-miR-520a-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584157
Biotype: antisense
Gene id: ENSG00000263531
Gene Name: RP13-753N3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-31
0.059
0
8mer
142-152
0.056
0
8mer
516-530
0.052
0
TSIX
hsa-miR-520a-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
32826-32842
0.019
5
8mer
7063-7069
0.014
0
8mer
36146-36167
0.013
1
8mer
29257-29275
0.008
1
8mer
33135-33153
0.008
1
8mer
35-56
0.006
0
6mer
36444-36448
0.005
1
7mer
33546-33565
0.004
4
8mer
30773-30788
0.004
2
7mer
34024-34042
0.004
2
6mer
35703-35727
0.003
3
7mer
30752-30766
0.003
1
6mer
23861-23884
0.003
2
8mer
3402-3412
0.002
1
8mer
30787-30802
0.002
1
8mer
27457-27481
0.002
1
8mer
5225-5245
0.002
1
7mer
31404-31430
0.002
1
6mer
6025-6029
0.002
1
6mer
29861-29880
0.002
1
6mer
27879-27906
0.002
1
6mer
28095-28119
0.002
0
6mer
20935-20955
0.002
0
6mer
24338-24358
0.002
1
6mer
31391-31416
0.001
Not Conserved
6mer
20016-20041
0.001
1
6mer
22843-22869
0.001
1
6mer
20454-20481
0.001
0
8mer
7163-7173
0.001
0
6mer
19483-19508
0.001
1
6mer
12509-12521
0.001
Not Conserved
RP11-255A11.2
hsa-miR-520a-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000420315
Biotype: antisense
Gene id: ENSG00000228072
Gene Name: RP11-255A11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-32
0.121
0
RP11-13N13.5
hsa-miR-520a-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584148
Biotype: sense_intronic
Gene id: ENSG00000264188
Gene Name: RP11-13N13.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-329
0.058
0
8mer
147-161
0.053
0
RP1-45N11.1
hsa-miR-520a-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000569865
Biotype: lincRNA
Gene id: ENSG00000260271
Gene Name: RP1-45N11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1400-1419
0.084
7
8mer
797-817
0.005
1
6mer
261-281
0.004
3
KCNQ1OT1
hsa-miR-520a-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18887-18910
0.006
1
8mer
423-444
0.006
1
8mer+wobble
50934-50955
0.005
1
7mer
68007-68031
0.004
0
8mer
38450-38456
0.004
0
8mer
85792-85817
0.004
0
7mer
34859-34884
0.004
0
8mer
71826-71846
0.004
0
8mer
12912-12925
0.004
1
7mer
71147-71163
0.003
0
8mer
18462-18482
0.003
1
6mer
87689-87713
0.003
1
7mer
82195-82220
0.003
0
7mer
69184-69203
0.002
2
6mer
3552-3565
0.002
1
6mer
70753-70772
0.002
0
6mer
29299-29315
0.002
0
6mer
47048-47074
0.002
3
6mer
1283-1308
0.002
1
6mer
66986-67002
0.002
1
8mer
12150-12160
0.002
0
7mer
1185-1207
0.002
0
6mer
55122-55137
0.002
1
6mer
14120-14141
0.002
0
6mer
49636-49663
0.002
1
6mer
71314-71334
0.002
1
6mer
52228-52245
0.002
1
6mer
88675-88690
0.002
2
6mer
18523-18545
0.002
1
6mer
59556-59576
0.001
1
6mer
1583-1607
0.001
0
6mer
38713-38737
0.001
0
6mer
78738-78763
0.001
0
6mer
52215-52219
0.001
1
6mer
77779-77799
0.001
1
AC002519.8
hsa-miR-520a-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570073
Biotype: sense_intronic
Gene id: ENSG00000259810
Gene Name: AC002519.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2059-2076
0.050
1
8mer
1136-1156
0.028
1
6mer
722-740
0.012
1
RP11-374M1.2
hsa-miR-520a-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000612999
Biotype: retained_intron
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-173
0.068
1
9mer
1288-1298
0.021
0
XLOC_010154
hsa-miR-520a-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020872
Biotype: transcript isomorph
Gene id: XLOC_010154
Gene Name: XLOC_010154
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
317-338
0.036
1
8mer
1860-1877
0.022
1
8mer
1340-1352
0.019
4
6mer
2279-2300
0.008
6
6mer
1796-1816
0.004
1
CTD-2008N3.1
hsa-miR-520a-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503415
Biotype: lincRNA
Gene id: ENSG00000250921
Gene Name: CTD-2008N3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
303-319
0.074
4
7mer
511-536
0.012
1
LINC01189
hsa-miR-520a-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_046203.1
Biotype: lincRNA
Gene id: NR_046203.1 (gene)
Gene Name: LINC01189
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
340-355
0.085
1
RP3-323A16.1
hsa-miR-520a-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
19373-19388
0.006
Not Conserved
7mer
28813-28834
0.005
1
8mer
7449-7468
0.005
0
7mer
53284-53310
0.004
1
7mer
36869-36888
0.004
2
8mer
38881-38906
0.003
1
6mer
53935-53958
0.003
1
8mer
44780-44797
0.003
0
8mer
10844-10854
0.003
1
6mer
20379-20398
0.003
3
8mer
28237-28258
0.003
1
8mer
36593-36618
0.002
1
7mer
35036-35047
0.002
1
6mer
25699-25715
0.002
1
8mer
3003-3023
0.002
1
6mer
14823-14845
0.002
2
6mer
7414-7430
0.002
0
6mer
18911-18936
0.002
1
7mer
42742-42763
0.002
1
6mer
9816-9838
0.002
1
6mer
18594-18610
0.002
1
7mer
40266-40277
0.002
1
6mer
2018-2044
0.002
1
6mer
40197-40212
0.002
1
6mer
47834-47848
0.002
1
6mer
31796-31810
0.002
1
6mer
39882-39904
0.001
1
8mer
47959-47969
0.001
0
6mer
31656-31671
0.001
0
6mer
11777-11800
0.001
1
7mer
11845-11862
0.001
1
6mer
35238-35255
0.001
0
6mer
1298-1309
0.001
Not Conserved
7mer
17539-17561
0.001
Not Conserved
RP11-374M1.2
hsa-miR-520a-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000399894
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-147
0.060
1
9mer
430-440
0.023
0
LINC01189
hsa-miR-520a-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428440
Biotype: lincRNA
Gene id: ENSG00000232827
Gene Name: LINC01189
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3138-3153
0.066
1
8mer
2294-2306
0.014
0
RP11-553L6.5
hsa-miR-520a-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000570269
Biotype: lincRNA
Gene id: ENSG00000259976
Gene Name: RP11-553L6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-100
0.063
15
6mer
76-102
0.016
12
RP11-111F5.8
hsa-miR-520a-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428709
Biotype: lincRNA
Gene id: ENSG00000233651
Gene Name: RP11-111F5.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-184
0.066
1
8mer
1016-1028
0.013
0
LINC01136
hsa-miR-520a-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457348
Biotype: lincRNA
Gene id: ENSG00000233791
Gene Name: LINC01136
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
344-359
0.048
1
8mer
877-893
0.028
1
6mer
1358-1375
0.002
0
AC006548.28
hsa-miR-520a-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60925-60949
0.009
0
7mer
4786-4810
0.007
1
7mer
44309-44327
0.007
0
8mer
2177-2200
0.006
1
9mer
2339-2362
0.004
0
8mer
59328-59351
0.003
1
8mer
63299-63322
0.003
1
6mer
41050-41069
0.003
1
7mer
9470-9491
0.003
1
6mer
16543-16547
0.002
1
8mer
66883-66903
0.002
0
6mer
28257-28279
0.002
0
8mer
81629-81644
0.002
1
7mer
51927-51951
0.002
Not Conserved
6mer
59469-59491
0.002
1
8mer
71556-71582
0.002
Not Conserved
6mer
72927-72939
0.002
0
6mer
36097-36120
0.002
1
6mer
38121-38131
0.002
1
6mer
67658-67680
0.002
0
6mer
23289-23316
0.002
1
7mer
41578-41595
0.001
0
6mer
36842-36868
0.001
1
6mer
56463-56484
0.001
0
6mer
75138-75165
0.001
0
6mer
55725-55738
0.001
0
6mer
12105-12123
0.001
1
6mer
41470-41493
0.001
1
6mer
35981-35997
0.001
1
6mer
16449-16474
0.000
Not Conserved
ZNF561-AS1
hsa-miR-520a-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586943
Biotype: retained_intron
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-520a-3p
Sequence: aaagugcuucccuuuggacugu
MirBase ID: MIMAT0002834
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
902-912
0.035
0
6mer
2354-2368
0.021
0
6mer
2271-2297
0.020
0
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